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A NONPARAMETRIC PROCEDURE OF THE SAMPLE SIZE DETERMINATION FOR SURVIVAL RATE TEST

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ZHAO Guolong (Henan Medical University Zhengzhou 450052) Heidi Holmes Morgan (University of Kansas Medical Center Kansas 66160) 数理医药学杂志 2000 0 13 3
关键词:Censorship;Effective sample size;Rate test;Sample size 期刊 slyyxzz 0 273-277 译文园地 fur -->

A NONPARAMETRIC PROCEDURE OF THE SAMPLE
SIZE DETERMINATION FOR SURVIVAL RATE TEST

ZHAO Guolong
(Henan Medical University
Zhengzhou 450052)
Heidi Holmes Morgan
(University of Kansas Medical Center Kansas 66160)

Abstract ObjectiveThis paper proposes a nonparametric procedure of the sample size determination forsurvival rate test. Methods Using the classical asymptotic normal procedure yields therequired homogenetic effective sample size and using the inverse operation with theprespecified value of the survival function of censoring times yields the required samplesize. Results It is matched with the rate test for censored data, does not involvesurvival distributions, and reduces to its classical counterpart when there is nocensoring. The observed power of the test coincides with the prescribed power under usualclinical conditions. Conclusion It can be used for planning survival studies of chronicdiseases.
Key works Censorship Effective sample size Rate test Sample size
中图分类号: O 213.9 文献标识码: A
文章编号: 1004-4337(2000)03-0273-05

In the survival studies of chronic diseases, the most frequently used methods ofdata analysis are the nonparametric estimations and comparisons of survival rates atdifferent times but there have been no matched methods for determining the required samplesize so far. Instead have been often used the parametric methods based on the assumptionof exponential distributions[1~7] such that the relevant sample sizes maynot be satisfied with the prescribed power.
This paper reports a nonparametric procedure of the sample size determination forsurvival rate test.

1 Survival Rate Test

Let Xi (i=1,…,n) be independent and identically distributed (i.i.d.)failure times of individuals with continuous distribution function Fx (t)=Pr(Xi ≤t).Its complement is survival function Sx (t)=1-Fx (t). Let Ci be i.i.d. censoring times with distribution function Fc (t)=Pr(Ci (t).The corresponding survival function is Sc (t)=1-Fc (t). Suppose C isindependent of X so that Fc is functionally independent of Fx .Suppose we observe a sequence of paires (Ti i )(i=1,…,n) suchthat Ti =min(Xi ,Ci ) Where δi =1 if Xi ≤Ci and δi =0 if Xi >Ci . Permutation gives order statisticsT(1) <…(n) and the corresponding indicator δ(1) ,…,δ(n) .
The Kaplan-Meier estimate[8] for Sx (t) is

(1)

Its homogenetic effective sample size is given by

(2)

It declines with the censoring vector (1-δ(i) )[9] :

(3)

and reduces to the sample size when there is no censoring:
Let π be the expectation of at some interested time t0 with π=π0 under a hypothesis H0 and π=π1 under an alternativehypothesis H1 , where π1 ≠π0 (two sided test) or π1 0 or π1 0 (one sided). By the asymptotic normality ofKaplan-Meier estimate[10] , the statistic for festing H0 is

(4)

where . Thus, we have Z~N(0,1) if H0 is true. Bycontrast with its classical counterpart[11] , the only change is that thesample size n is replaced by the observed homogenetic effective sample size in (4).

2 Determination ofRequired Sample Size

The determination of required homogenetic effective sample size can inherit theclassical asymptotic normal procedure[12]

(5)

where Zα and Zβ are the standard normal deviatesat levels α and β the essential design parameters respectively and D0 1 0 is the selected maximum error, ie. the principle design parameter.
As for the required sample size, it can be realized by the inverse operation fromm(t0 ) to n. Then it is useful to estimate the survival function of censoringtimes

(6)

It follows that , which is the complement of the empirical distributionfunction. Writing it as and substituting it into (2) gives

Taking π1 =Sx (t0 ),Ψ=Sc (t0 ),and b=1-δ(i) , we obtain the expected homogenetic effective sample size

m(t0 )=n(t0 )Ψ+b/π1 (7)

It still possesses the reducibility as Ψ=1,b=0, and m(t0 )=n(t0 )when there is no censoring. The inverse operation gives the required sample size

n(t0 )=m(t0 )/Ψ-b/(π1 Ψ)

It contains the two parameters b and Ψ and both of them correspond to thecensoring rate. It is not possible to establish the relationship between b and Ψ bynonparametric approach. Thus we have to omit the term -b/(π1 Ψ) and obtain ashorter equation

n(t0 )=m(t0 )/Ψ (8)

Fortunately, the term -b/(π1 Ψ) has a very small value underusual clinical conditions and its influence upon the sample sizes determined is negligible(see the next section). thus we need a supplimentary design parameter the prescribed valueof the survival function of censoring times Ψ. Design parameters are usually specified inthe light of pilot or previous similar trials. Writing , we can find the prescribed value ofΨ from π1 and the complement of empirical distribution function, where thelatter is especially easy to calculate.

3 Simulations

Simulations were undertaken to demonstrate the performance of the procedure invarious extreme clinical situations. Here we take α=0.05 (one-sided test) and β=0.1.Taking D0 =0.2,0.25,0.3,0.35 and π0 =0.5 yields π1 =0.7,0.75,0.8,0.85,or π1 =0.5 yields π0 =0.3,0.25,0.2,0.15 respectively. Using(5) withthese values yields the required homogenetic effective sample size m(t0 ). Letthe suplimentary design parameter be Ψ=π1 b/(1-b) ,b=0,0.1,0.2,0.5such that Ψ=1 if b=0 and Ψ=π1 if b=0.5 Using (8) with Ψ-values gives therequired sample size n(t0 ). A total of 32 simulation projects are formed basedon various combinations of these values of design parameters.
The lifetime distributions used are Weibull, namely Fx (t)=1-exp(-θt2 ).Taking t0 =1 "year" we obtain θ=-lnπ1 . We use γ=1/3,2/3,1,3/2,and 3 representing decreasing, constant, and increasing hazard respectively. The censoringdistributions are exponential: Fc (t)=1-exp(-φt) or uniform:

Adjusting φ- or w-value gives the observed average survival function ofcensoring times in each set of simulations.
Sampling under the distributions yields the lifetimes Xi =(-θ-1 lnUi )1/2 and the censoring times Ci =-φ-1 lnVi or Ci =wVi ,i=1,…,n(t0 ),where Ui and Vi are the pseudo-random numbers in the interval (0,1).They were generated from the same initial seed for all sets of simulations. The observedsurvival time is Ti =Xi , δi =1 if Xi ≤Ci and the observed censoring time is Ti =Ci , δi =0 if Xi >Ci .Thus we obtain the order statistics T(1) <…(n(t0 )) and the corresponding δ(i) by permutation.
We are then led to calculate , and with t0 =1 based on (6),(1),and (2) respectively.Finally, we get the statistic Z.
Performing 1000 independent trials yields the averages , and the observed power. The latteris the fraction of Z≥1.6448 in so many replication. A 95% confidence interval for theprespecified power 1-β is 0.9±1.96(0.9X 0.1/1000)1/2 =(0.881,0.919).
The observed average survival function of censoring times coincidesexactly with Ψ with differences less than 0.001 in each set of simulations. The averagesurvival rate coincides with the prescribed π1 and is slightlydiscrepant with high censoring level, ie. Ψ=π1 . Table 1 shows the observedaverage homogenetic effective sample size in some sets of simulations. It coincides withthe expected homogenetic effective sample size m(t0 ) when the lifetime and thecensoring time are both exponential in their distributions. As far as Weibull lifetimedistributions are concerned, however, is slightly larger with decreasing hazard and controry withincreasing hazard, but the difference is not greater than one sample unit. For simulationswith uniform censoring distributions, the results are similar to those reported above.
The observed power when π1 =0.7-0.85 and π0 =0.5 is listed inTable 2 and that when π1 =0.5 and π0 =0.3-0.15 in Table3. The veluesof the observed power are around the prespecified power and most of them are within the95% confidence interval when the lifetime and the censoring time are both exponential intheir distributions. Nevertheless, it is slightly higher with decreasing hazard andcontrory with increasing hazard. Taking uniform censoring distributions yields similarsimulation results.

Tab.1 The observed average homogenetic effective samplesize derived from Weibull lifetime distributions and exponential
or uniform censoring time distributions in some sets of simulations

Ψ m(t0 ) n(t0 ) Shape parameter γ
1/3 2/3 1 3/2 3
D0 =0.30, π1 =0.8, π0 =0.5
1 19.8 19.8 20.0 20.0 20.0 20.0 20.0
0.976 19.8 20.3 19.7 19.7 19.7 19.7 19.6 19.6 19.6 19.6 19.5 19.6
0.946 19.8 20.9 20.2 20.3 20.1 20.1 20.1 20.1 20.0 20.0 19.9 20.0
0.8 19.8 24.8 20.9 20.9 20.7 20.7 20.6 20.6 20.5 20.5 20.3 20.4
D0 =0.20, π1 =0.7, π0 =0.5
1 49.7 49.7 50.0 50.0 50.0 50.0 50.0
0.961 49.7 51.7 50.3 50.3 50.2 50.2 50.1 50.1 50.1 50.1 50.0 50.1
0.915 49.7 54.3 50.0 50.0 49.8 49.8 49.7 49.7 49.6 49.6 49.5 49.5
0.7 49.7 71 50.8 50.8 50.5 50.6 50.4 50.5 50.3 50.4 50.1 50.1
D0 =0.25, π1 =0.5, π0 =0.25
1 29.3 29.3 29.0 29.0 29.0 29.0 29.0
0.926 29.3 31.6 30.1 30.1 29.9 29.9 29.8 29.8 29.7 29.8 29.7 29.7
0.841 29.3 34.8 30.2 30.3 29.9 30.0 29.8 29.8 29.6 29.8 29.5 29.7
0.5 29.3 58.6 31.2 31.0 30.9 30.8 30.7 30.6 30.4 30.4 30.1 30.1
D0 =0.35, π1 =0.5, π0 =0.15
1 12.3 12.3 12.0 12.0 12.0 12.0 12.0
0.926 12.3 13.3 12.4 12.4 12.3 12.3 12.2 12.2 12.1 12.2 12.1 12.1
0.841 12.3 14.6 13.4 13.4 13.2 13.1 13.0 13.0 12.9 12.9 12.8 12.8
0.5 12.3 24.6 14.2 14.1 13.9 13.8 13.7 13.6 13.4 13.4 13.2 13.2
α=0.05 (one-sided), β=0.1,D0 1 0 theselected maximum error, π0 = The expected survival rate under mull hypothesis,π1 = The expected survival rate under alternative hypothesis, Ψ= Theprespecified survival function of censoring times, m(t0 )= The requiredhomogenetic effective sample size, n(t0 )= The required sample size. The formerfigure is derived from the exponential censoring time distributions and the latter onefrom the uniform distributions.

Tab.2 The observed power of survival rate test forWeibull lifetime distributions and exponential or uniform censoring
time distributions when π1 =0.7-0.85 and π0 =0.5

Ψ m(t0 ) n(t0 ) Shape parameter γ
1/3 2/3 1 3/2 3
D0 =0.20, π1 =0.7, π0 =0.5
1 49.7 49.7 0.914 0.914 0.914 0.914 0.914
0.961 49.7 51.7 0.888 0.895 0.887 0.897 0.886 0.895 0.884 0.894 0.886 0.894
0.915 49.7 54.3 0.887 0.879 0.887 0.877 0.889 0.873 0.889 0.872 0.887 0.876
0.7 49.7 71 0.925 0.927 0.923 0.917 0.916 0.909 0.916 0.903 0.913 0.897
D0 =0.25, π1 =0.75, π0 =0.5
1 30.4 30.4 0.898 0.898 0.898 0.898 0.898
0.969 30.4 31.3 0.871 0.870 0.871 0.870 0.872 0.873 0.875 0.872 0.874 0.874
0.931 30.4 32.6 0.907 0.904 0.904 0.901 0.902 0.899 0.899 0.899 0.898 0.897
0.75 30.4 40.5 0.909 0.909 0.909 0.904 0.905 0.904 0.907 0.898 0.895 0.893
D0 =0.30, π1 =0.8, π0 =0.5
1 19.8 19.8 0.916 0.916 0.916 0.916 0.916
0.976 19.8 20.3 0.913 0.914 0.907 0.904 0.904 0.901 0.902 0.900 0.901 0.893
0.946 19.8 20.9 0.893 0.894 0.892 0.893 0.890 0.894 0.891 0.891 0.886 0.888
0.8 19.8 24.8 0.916 0.912 0.910 0.911 0.911 0.910 0.904 0.910 0.904 0.899
D0 =0.35, π1 =0.85, π0 =0.5
1 13.4 13.4 0.885 0.885 0.885 0.885 0.885
0.982 13.4 13.6 0.861 0.862 0.863 0.862 0.864 0.862 0.865 0.863 0.866 0.863
0.96 13.4 13.9 0.864 0.863 0.868 0.865 0.867 0.868 0.871 0.870 0.872 0.869
0.85 13.4 15.7 0.924 0.924 0.914 0.914 0.915 0.915 0.908 0.908 0.904 0.899
See notes to Tab.1

Tab.3 The observed power ofsurvival rate test for Weibull lifetime distributions and exponential or uniform censoring
time distributions when π1 =0.5 and π0 =0.15-0.3

Ψ m(t0 ) n(t0 ) Shape parameter γ
1/3 2/3 1 3/2 3
D0 =0.20, π1 =0.5, π0 =0.3
1 48.6 48.6 0.926 0.926 0.926 0.926 0.926
0.926 48.6 52.5 0.900 0.898 0.899 0.899 0.900 0.897 0.901 0.900 0.897 0.898
0.841 48.6 57.8 0.912 0.902 0.904 0.898 0.904 0.899 0.898 0.897 0.902 0.889
0.5 48.6 97.2 0.953 0.947 0.940 0.929 0.935 0.924 0.928 0.923 0.915 0.912
D0 =0.25, π1 =0.5, π0 =0.25
1 29.3 29.3 0.868 0.868 0.868 0.868 0.868
0.926 29.3 31.6 0.907 0.903 0.908 0.900 0.903 0.901 0.899 0.901 0.900 0.903
0.841 29.3 34.8 0.917 0.918 0.904 0.913 0.911 0.913 0.903 0.907 0.904 0.899
0.5 29.3 58.6 0.941 0.938 0.920 0.934 0.921 0.925 0.924 0.921 0.910 0.905
D0 =0.30, π1 =0.5, π0 =0.2
1 18.7 18.7 0.928 0.928 0.928 0.928 0.928
0.926 18.7 20.2 0.924 0.923 0.919 0.920 0.915 0.918 0.912 0.911 0.912 0.910
0.841 18.7 22.3 0.921 0.914 0.916 0.913 0.912 0.911 0.913 0.909 0.909 0.910
0.5 18.7 37.5 0.944 0.937 0.933 0.927 0.918 0.921 0.920 0.922 0.908 0.908
D0 =0.35, π1 =0.5, π0 =0.15
1 12.3 12.3 0.932 0.932 0.932 0.932 0.932
0.926 12.3 12.3 0.856 0.867 0.857 0.875 0.864 0.874 0.868 0.878 0.872 0.882
0.841 12.3 14.6 0.914 0.933 0.912 0.923 0.916 0.920 0.914 0.915 0.908 0.911
0.5 12.3 24.6 0.957 0.948 0.944 0.934 0.931 0.927 0.931 0.924 0.917 0.910
See notes to Tab.1

The experimentwas performed repeatedly with D0 =-0.2,-0.25,-0.3,-0.35. The results are similarto hotse reported above when D0 -values spun over the upper half of life tableas π1 =0.5 and π0 =0.7,0.75,0.8,0.85. When D0 -values spunover the lower half of life table as π0 =0.5 and π1 =0.3,0.25,0.2,0.15,however, the results are not so stable especially in the sets of simulations with Ψ=π1 , ie. the censoring rate 0.5 or so. Thus the observed power may be higher than 0.919 theupper limit of the 95% confidence interval even 0.924 that of the 99% confidence intervalin some sets. It suggests that the procedure be relatively conservative when the censoringlevel is nearer to 0.5 and π1 <0.3.

4 A Worked Example

We specify the values of design parameters on the basis of a previous clinicaltrial[13] for planning a new clinical trial. In that trial, two dosageregimens of 60 Co radiotherapy were compared between two groups of patientswith esophageal carcinoma, 34 each. The trial did not yield a significant difference ofefficacy betwenn two groups so that the pooled-sample one-year survival rate is calculatedbased on (1) as 0.485. Among the 68 patients, three were lost fo follow-up during 3-yearfollow-up period and 11 alive at the end of study. The survival function of censoringtimes is estimated by (6) as 0.915.
And now, consider a new modality of radiotherapy. It will be clinically acceptableas long as it can yield an increment of 0.2 of one-year survival rate. The question is howmany patients are needed for detecting the increment.
As a usual practice, we take α=0.05 (one-sided test) and β=0.1 and then Zα =1.6448and Zβ =1.2816. The other design parameters are prespecified based on the data.We take π0 =0.5 and this plus the increment D0 =0.2 yields π1 =0.7.The survival function of censoring times is taken as Ψ=0.9.
Using (5) and (8) yields the required homogenetic effective sample size m(t0 )=49.682and the required sample size n(t0 )=55.202 respectively. The trial needs 55patients.

5 Discussion

By contrast with the existing methods of this kind, this procedure has suchcharacteristic as that it is thoroughly nonparametric. The term -b/(π1 Ψ) isemitted at the second step of the procedure. It is shown in the simulations that thevariations in design results due to the omission are not greater than one sample unit.When the censoring level is nearer to 0.5 and π1 is nearer to life tabletails, however, the omission leads to slightly conservative results. According to Simonand Wittes[14] , not more than 15% of eligible patients should be consideredinevaluable for response due to various causes so that high censoring level is notpreferred. Life table tails are often the regions of greatest medical interest and thesource of most mistakes[15] . It was shown by experience that thestatistical power is easily lost in the regions. A relatively conservative designprocedure in the regions is fortunately helpful for keeping power. The survival functionof censoring times is added as a supplimentary design parameter for this purpose.
The nonparametric procedure is matched with the rate test for censured data. It doesnot involve survival distributions. It reduces to its classical counterpart when there isno censoring. The observed power of the test coincides with the prescribed power in commonclinical situations. Thus it can be applied to planning survival studies of chronicdiseases.

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收稿日期:1999-09-23 (ZHAO Guolong (Henan Medical University Zhengzhou 450052) Heidi Holmes Morgan (University )

 
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